Function cif::pdb::is_valid_pdbx_file(const file&, const validator&)

Function Documentation

bool cif::pdb::is_valid_pdbx_file(const file &pdbx_file, const validator &v = validator_factory::instance().get("mmcif_pdbx.dic"))

This is an extension to cif::validator, use the logic in common PDBx files to see if the file is internally consistent.

This function for now checks if the following categories are consistent:

atom_site -> pdbx_poly_seq_scheme -> entity_poly_seq -> entity_poly -> entity

Use the common cif::VERBOSE flag to turn on diagnostic messages.

This function throws a std::system_error in case of an error

Parameters

  • pdbx_file – The input file

  • v – The validator to use

Returns

Returns true if the file was valid and consistent